cymobase | species

Species

Cymobase Content

Xanthoria parietina 46-1-SA22 | Xp

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Xanthorioideae | Xanthoria | Xanthoria parietina ]

Xenopus laevis | Xl

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Xenopodinae | Xenopus | Xenopus ]

Xenopus tropicalis | Xt

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Xenopodinae | Xenopus | Silurana ]

Xenoturbella bocki | Xb

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Xenoturbellida | Xenoturbellidae | Xenoturbella ]

Xiphinema index | Xi

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Longidoroidea | Longidoridae | Xiphinema ]

Xiphophorus maculatus strain JP 163 A | Xm

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Poeciliidae | Poeciliinae | Xiphophorus ]

Xiphophorus maculatus x Xiphophorus helleri | Xx

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Poeciliidae | Poeciliinae | Xiphophorus ]

Xanthoria parietina 46-1-SA22 | Xp [ Opisthokonta | Fungi | Dikarya | . . . . . . | Xanthorioideae | Xanthoria | Xanthoria parietina ]

Xenopus laevis | Xl [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Xenopodinae | Xenopus | Xenopus ]

Xenopus tropicalis | Xt [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Xenopodinae | Xenopus | Silurana ]

Xenoturbella bocki | Xb [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Xenoturbellida | Xenoturbellidae | Xenoturbella ]

Xiphinema index | Xi [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Longidoroidea | Longidoridae | Xiphinema ]

Xiphophorus maculatus strain JP 163 A | Xm [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Poeciliidae | Poeciliinae | Xiphophorus ]

Xiphophorus maculatus x Xiphophorus helleri | Xx [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Poeciliidae | Poeciliinae | Xiphophorus ]

Xanthoria parietina 46-1-SA22 | Xp

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Xanthorioideae | Xanthoria | Xanthoria parietina ]

Xenopus laevis | Xl

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Xenopodinae | Xenopus | Xenopus ]

Xenopus tropicalis | Xt

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Xenopodinae | Xenopus | Silurana ]

Xenoturbella bocki | Xb

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Xenoturbellida | Xenoturbellidae | Xenoturbella ]

Xiphinema index | Xi

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Longidoroidea | Longidoridae | Xiphinema ]

Xiphophorus maculatus strain JP 163 A | Xm

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Poeciliidae | Poeciliinae | Xiphophorus ]

Xiphophorus maculatus x Xiphophorus helleri | Xx

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Poeciliidae | Poeciliinae | Xiphophorus ]

Taxonomy:	Eukaryota \| Opisthokonta \| Fungi \| Dikarya \| Ascomycota \| saccharomyceta \| Pezizomycotina \| leotiomyceta \| Lecanoromycetes \| OSLEUM clade \| Lecanoromycetidae \| Teloschistales \| Teloschistineae \| Teloschistaceae \| Xanthorioideae \| Xanthoria \| Xanthoria parietina
		Go to NCBI Taxonomy (714311)
		Encyclopedia of life
		Wikipedia

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Sarcopterygii \| Dipnotetrapodomorpha \| Tetrapoda \| Amphibia \| Batrachia \| Anura \| Pipoidea \| Pipidae \| Xenopodinae \| Xenopus \| Xenopus
Common:	African clawed frog, clawed frog (German: Krallenfrosch)
		Go to NCBI Taxonomy (8355)
		Encyclopedia of life
		Wikipedia

Projects:
			GenBank - NIH genetic sequence database: GenBank species TBLASTN



			National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project



			National Center for Biotechnology Information: Xenopus Gene Collection



			The Gene Index Project: DFCI African clawed frog (Xenopus laevis) Gene Index



			Xenbase: a Xenopus web resource: Xenopus laevis and tropicalis biology and genomics resource

Publications:

Session AM, Uno Y, Kwon T et. al.

(2016)

Genome evolution in the allotetraploid frog Xenopus laevis.

Nature 538, 336-343.

10.1038/nature19840

Pollet N, Muncke N, Verbeek B et. al.

(2005)

An atlas of differential gene expression during early Xenopus embryogenesis.

Mech Dev 122, 365-439.

10.1016/j.mod.2004.11.009

Gerhard DS, Wagner L, Feingold EA et. al.

(2004)

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

Genome Res 14, 2121-7.

10.1101/gr.2596504

Show all 6 Publications Pub

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Sarcopterygii \| Dipnotetrapodomorpha \| Tetrapoda \| Amphibia \| Batrachia \| Anura \| Pipoidea \| Pipidae \| Xenopodinae \| Xenopus \| Silurana
Synonym:	Silurana tropicalis
Common:	western clawed frog (German: Gespornter Krallenfrosch, Tropischer Krallenfrosch)
		Go to NCBI Taxonomy (8364)
		Encyclopedia of life
		Wikipedia

Projects:
			DOE Joint Genome Institute: Xenopus tropicalis



			e! Ensembl: X.tropicalis



			National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project



			National Center for Biotechnology Information: Xenopus Gene Collection



			National Center for Biotechnology Information Reference Sequences: Xenopus (Silurana) tropicalis (western clawed frog) genome view



			The Gene Index Project: DFCI Xenopus tropicalis Gene Index



			The Genome Sequencing Center at Washington University: Xenopus tropicalis



			UCSC Genome Bioinformatics: Xenopus tropicalis Genome Browser Gateway



			Xenbase: a Xenopus web resource: Xenopus laevis and tropicalis biology and genomics resource

Publications:

Hellsten U, Harland RM, Gilchrist MJ et. al.

(2010)

The genome of the Western clawed frog Xenopus tropicalis.

Science 328, 633-636.

10.1126/science.1183670

Gerhard DS, Wagner L, Feingold EA et. al.

(2004)

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

Genome Res 14, 2121-7.

10.1101/gr.2596504

Strausberg RL, Feingold EA, Grouse LH et. al.

(2002)

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Proc Natl Acad Sci U S A 99, 16899-903.

10.1073/pnas.242603899

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Xenacoelomorpha \| Xenoturbellida \| Xenoturbellidae \| Xenoturbella
		Go to NCBI Taxonomy (242395)
		Encyclopedia of life
		Wikipedia

Courtesy of UC Davis Plant Pathology photo

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Nematoda \| Enoplea \| Dorylaimia \| Dorylaimida \| Dorylaimina \| Longidoroidea \| Longidoridae \| Xiphinema
		Go to NCBI Taxonomy (46003)
		Encyclopedia of life
		Wikipedia

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Actinopterygii \| Actinopteri \| Neopterygii \| Teleostei \| Osteoglossocephalai \| Clupeocephala \| Euteleosteomorpha \| Neoteleostei \| Eurypterygia \| Ctenosquamata \| Acanthomorphata \| Euacanthomorphacea \| Percomorphaceae \| Ovalentaria \| Atherinomorphae \| Cyprinodontiformes \| Cyprinodontoidei \| Poeciliidae \| Poeciliinae \| Xiphophorus
Synonym:	Platypoecilus maculatus
Common:	southern platyfish (German: Platy, Spiegelkaerpfling)
		Go to NCBI Taxonomy (8083)
		Encyclopedia of life
		Wikipedia

Publication:

Schartl M, Walter RB, Shen Y et. al.

(2013)

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits.

Nat Genet 45, 567-572.

10.1038/ng.2604

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Actinopterygii \| Actinopteri \| Neopterygii \| Teleostei \| Osteoglossocephalai \| Clupeocephala \| Euteleosteomorpha \| Neoteleostei \| Eurypterygia \| Ctenosquamata \| Acanthomorphata \| Euacanthomorphacea \| Percomorphaceae \| Ovalentaria \| Atherinomorphae \| Cyprinodontiformes \| Cyprinodontoidei \| Poeciliidae \| Poeciliinae \| Xiphophorus
Comment:	Hybrid
		Go to NCBI Taxonomy (96538)
		Encyclopedia of life
		Wikipedia

Xuthus swallowtail (Common Name)

Papilio xuthus

Proteins	42
Sequences	27253
Amino Acids	35949299
Domains	185
Species	1529
Projects	12173
WGS-Projects	5287
Publications	697

DOE Joint Genome Institute: Xanthoria parietina 46-1 v1.0