Species

Falco cherrug | Fac

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Falconiformes | Falconidae | Falco ]

Courtesy of Marek Szczepanek

Taxonomy: Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Deuterostomia | Chordata | Craniata | Vertebrata | Gnathostomata | Teleostomi | Euteleostomi | Sarcopterygii | Dipnotetrapodomorpha | Tetrapoda | Amniota | Sauropsida | Sauria | Archelosauria | Archosauria | Dinosauria | Saurischia | Theropoda | Coelurosauria | Aves | Neognathae | Falconiformes | Falconidae | Falco Common: Saker falcon (German: Sakerfalke, Saker, Würgfalke) Go to NCBI Taxonomy (345164) Encyclopedia of life Wikipedia Projects: (GIGA)nDB: Genomic data from the saker falcon (Falco cherrug). National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project Publication: Zhan X, Pan S, Wang J et. al. (2013) Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle. Nat Genet 45, 563-566. 10.1038/ng.2588

Falco peregrinus | Fap

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Falconiformes | Falconidae | Falco ]

Courtesy of Georges Lignier

Taxonomy: Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Deuterostomia | Chordata | Craniata | Vertebrata | Gnathostomata | Teleostomi | Euteleostomi | Sarcopterygii | Dipnotetrapodomorpha | Tetrapoda | Amniota | Sauropsida | Sauria | Archelosauria | Archosauria | Dinosauria | Saurischia | Theropoda | Coelurosauria | Aves | Neognathae | Falconiformes | Falconidae | Falco Common: peregrine falcon (German: Wanderfalke) Go to NCBI Taxonomy (8954) Encyclopedia of life Wikipedia Projects: (GIGA)nDB: Genomic data from the peregrine falcon (Falco peregrinus). National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project Publications: Zhang G, Li C, Li Q et. al. (2014) Comparative genomics reveals insights into avian genome evolution and adaptation. Science 346, 1311-1320. 10.1126/science.1251385 Jarvis ED, Mirarab S, Aberer AJ et. al. (2014) Whole-genome analyses resolve early branches in the tree of life of modern birds. Science 346, 1320-1331. 10.1126/science.1253451 Zhan X, Pan S, Wang J et. al. (2013) Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle. Nat Genet 45, 563-566. 10.1038/ng.2588

Fasciola gigantica | Fg

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Echinostomatoidea | Fasciolidae | Fasciola ]

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Taxonomy: Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Platyhelminthes | Trematoda | Digenea | Plagiorchiida | Echinostomata | Echinostomatoidea | Fasciolidae | Fasciola Go to NCBI Taxonomy (46835) Encyclopedia of life Wikipedia Project: National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project

Fasciola hepatica | Fah

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Echinostomatoidea | Fasciolidae | Fasciola ]

Courtesy of U.L.B. - Louis De Vos

Taxonomy: Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Platyhelminthes | Trematoda | Digenea | Plagiorchiida | Echinostomata | Echinostomatoidea | Fasciolidae | Fasciola Common: liver fluke (German: großer Leberegel) Go to NCBI Taxonomy (6192) Encyclopedia of life Wikipedia Projects: GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project Publication: Cwiklinski K, Dalton JP, Dufresne PJ et. al. (2015) The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution. Genome Biol 16, 71. 10.1186/s13059-015-0632-2

Felis catus | Fc

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Felidae | Felinae | Felis ]

Taxonomy: Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Deuterostomia | Chordata | Craniata | Vertebrata | Gnathostomata | Teleostomi | Euteleostomi | Sarcopterygii | Dipnotetrapodomorpha | Tetrapoda | Amniota | Mammalia | Theria | Eutheria | Boreoeutheria | Laurasiatheria | Carnivora | Feliformia | Felidae | Felinae | Felis Synonym: Felis silvestris catus, Felis domesticus Common: domestic cat, cats (German: Hauskatze) Go to NCBI Taxonomy (9685) Encyclopedia of life Wikipedia Projects: Broad Institute of Harvard and MIT: Mammalian Genome Project e! Ensembl: Cat National Center for Biotechnology Information: Cat Sequencing Project UCSC Genome Bioinformatics: Cat (Felis catus) Genome Browser Gateway Publications: Montague MJ, Li G, Gandolfi B et. al. (2014) Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proc Natl Acad Sci U S A 111, 17230-17235. 10.1073/pnas.1410083111 Lindblad-Toh K, Garber M, Zuk O et. al. (2011) A high-resolution map of human evolutionary constraint using 29 mammals. Nature 478, 476-482. 10.1038/nature10530 Pontius JU, Mullikin JC, Smith DR et. al. (2007) Initial sequence and comparative analysis of the cat genome. Genome Res 17, 1675-1689. 10.1101/gr.6380007

Fenneropenaeus chinensis | Fec

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Penaeoidea | Penaeidae | Penaeus ]

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Taxonomy: Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Crustacea | Multicrustacea | Malacostraca | Eumalacostraca | Eucarida | Decapoda | Dendrobranchiata | Penaeoidea | Penaeidae | Penaeus Synonym: Penaeus chinensis Common: fleshy prawn (German: Hauptmannsgarnele) Go to NCBI Taxonomy (139456) Encyclopedia of life Wikipedia Project: GenBank - NIH genetic sequence database: GenBank species TBLASTN Publication: Zhang J, Li F, Wang Z et. al. (2006) Cloning, expression and identification of ferritin from Chinese shrimp, Fenneropenaeus chinensis. J Biotechnol 125, 173-184. 10.1016/j.jbiotec.2006.03.010

Festuca arundinacea | Fa

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Poeae Chloroplast Group 2 (Poeae type) | Loliinae | Festuca ]

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Taxonomy: Eukaryota | Viridiplantae | Streptophyta | Streptophytina | Embryophyta | Tracheophyta | Euphyllophyta | Spermatophyta | Magnoliophyta | Mesangiospermae | Liliopsida | Petrosaviidae | commelinids | Poales | Poaceae | BOP clade | Pooideae | Poodae | Poeae | Poeae Chloroplast Group 2 (Poeae type) | Loliinae | Festuca Synonym: Schedonorus arundinaceus, Lolium arundinaceum, Schedonorus phoenix (Scop.) Holub, Schedonorus phoenix, Lolium arundinaceum (Schreb.) Darbysh., Schedonorus arundinaceus (Schreb.) Dumort., Festuca arundinacea Schreb., Festuca elatior L., Festuca elatior Common: tall fescue (German: Rohrschwingel) Go to NCBI Taxonomy (4606) Encyclopedia of life Wikipedia Projects: National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project The Gene Index Project: DFCI Tall fescue Gene Index

Fibroporia radiculosa TFFH 294 | Fr

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Polyporales incertae sedis | Fibroporia | Fibroporia radiculosa ]

Courtesy of Renée Lebeuf

Taxonomy: Eukaryota | Opisthokonta | Fungi | Dikarya | Basidiomycota | Agaricomycotina | Agaricomycetes | Agaricomycetes incertae sedis | Polyporales | Polyporales incertae sedis | Fibroporia | Fibroporia radiculosa Go to NCBI Taxonomy (1078123) Encyclopedia of life Wikipedia Project: National Center for Biotechnology Information: NCBI Fungi Genomes Project

Ficedula albicollis | Fia

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Passeriformes | Muscicapidae | Ficedula ]

Courtesy of Katarzyna Stępniewska

Taxonomy: Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Deuterostomia | Chordata | Craniata | Vertebrata | Gnathostomata | Teleostomi | Euteleostomi | Sarcopterygii | Dipnotetrapodomorpha | Tetrapoda | Amniota | Sauropsida | Sauria | Archelosauria | Archosauria | Dinosauria | Saurischia | Theropoda | Coelurosauria | Aves | Neognathae | Passeriformes | Muscicapidae | Ficedula Common: Collared Flycatcher (German: Halsbandschnäpper) Go to NCBI Taxonomy (59894) Encyclopedia of life Wikipedia Projects: National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project Publication: Ellegren H, Smeds L, Burri R et. al. (2012) The genomic landscape of species divergence in Ficedula flycatchers. Nature 491, 756-760. 10.1038/nature11584

Fomitiporia mediterranea | Fm

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Hymenochaetales | Hymenochaetaceae | Fomitiporia ]

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Taxonomy: Eukaryota | Opisthokonta | Fungi | Dikarya | Basidiomycota | Agaricomycotina | Agaricomycetes | Agaricomycetes incertae sedis | Hymenochaetales | Hymenochaetaceae | Fomitiporia Go to NCBI Taxonomy (208960) Encyclopedia of life Wikipedia Projects: DOE Joint Genome Institute: Fomitiporia mediterranea v1.0 National Center for Biotechnology Information: NCBI Fungi Genomes Project Publication: Floudas D, Binder M, Riley R et. al. (2012) The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336, 1715-1719. 10.1126/science.1221748

Fomitopsis pinicola | Fp

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Polyporales | Fomitopsidaceae | Fomitopsis ]

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Taxonomy: Eukaryota | Opisthokonta | Fungi | Dikarya | Basidiomycota | Agaricomycotina | Agaricomycetes | Agaricomycetes incertae sedis | Polyporales | Fomitopsidaceae | Fomitopsis Go to NCBI Taxonomy (40483) Encyclopedia of life Wikipedia Projects: DOE Joint Genome Institute: Fomitopsis pinicola SS1 v1.0 National Center for Biotechnology Information: NCBI Fungi Genomes Project Publication: Floudas D, Binder M, Riley R et. al. (2012) The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336, 1715-1719. 10.1126/science.1221748

Fonticula alba | Foa

[ Opisthokonta | Nucleariidae and Fonticula group | Fonticulida | . . .
. . . | Fonticulida | Fonticulaceae | Fonticula ]

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Taxonomy: Eukaryota | Opisthokonta | Nucleariidae and Fonticula group | Fonticulida | Fonticulaceae | Fonticula Go to NCBI Taxonomy (691883) Encyclopedia of life Wikipedia Projects: Broad Institute of Harvard and MIT: Origins of Multicellularity Database GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS

Fopius arisanus | Foar

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Braconidae | Opiinae | Fopius ]

Courtesy of Scott Bauer

Taxonomy: Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Hymenoptera | Apocrita | Parasitoida | Ichneumonoidea | Braconidae | Opiinae | Fopius Go to NCBI Taxonomy (64838) Encyclopedia of life Wikipedia Projects: International TSA Sequencing Consortium: Fopius arisanus TSA Sequencing Consortium National Center for Biotechnology Information: NCBI Insect Genomes Project Publication: Geib SM, Liang GH, Murphy TD et. al. (2017) Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies. G3 (Bethesda) 7, 2407-2411. 10.1534/g3.117.040741

Fragaria vesca | Frv

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Potentilleae | Fragariinae | Fragaria ]

Courtesy of Philip Jägenstedt

Taxonomy: Eukaryota | Viridiplantae | Streptophyta | Streptophytina | Embryophyta | Tracheophyta | Euphyllophyta | Spermatophyta | Magnoliophyta | Mesangiospermae | eudicotyledons | Gunneridae | Pentapetalae | rosids | fabids | Rosales | Rosaceae | Rosoideae | Potentilleae | Fragariinae | Fragaria Synonym: Fragaria vesca L. Common: European strawberry, wood strawberry, alpine strawberry (German: Walderdbeere) Go to NCBI Taxonomy (57918) Encyclopedia of life Wikipedia Projects: GenBank - NIH genetic sequence database: GenBank species TBLASTN WGS Genome Database for Rosaceae: Fragaria vesca Phytozome: Fragaria vesca v1.1 (Strawberry) Publications: Tennessen JA, Govindarajulu R, Ashman TL et. al. (2014) Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps. Genome Biol Evol 6, 3295-3313. 10.1093/gbe/evu261 Shulaev V, Sargent DJ, Crowhurst RN et. al. (2010) The genome of woodland strawberry (Fragaria vesca). Nat Genet 43, 109-16. 10.1038/ng.740

Fragaria vesca subsp. vesca | Fv

[ Viridiplantae | Streptophyta | Streptophytina | . . .
. . . | Fragariinae | Fragaria | Fragaria vesca ]

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Taxonomy: Eukaryota | Viridiplantae | Streptophyta | Streptophytina | Embryophyta | Tracheophyta | Euphyllophyta | Spermatophyta | Magnoliophyta | Mesangiospermae | eudicotyledons | Gunneridae | Pentapetalae | rosids | fabids | Rosales | Rosaceae | Rosoideae | Potentilleae | Fragariinae | Fragaria | Fragaria vesca Go to NCBI Taxonomy (101020) Encyclopedia of life Wikipedia

Fragilariopsis cylindrus CCMP1102 | Frc

[ Stramenopiles | Bacillariophyta | Bacillariophyceae | . . .
. . . | Bacillariaceae | Fragilariopsis | Fragilariopsis cylindrus ]

Courtesy of Henrik Lange and Gerhard Dieckmann

Taxonomy: Eukaryota | Stramenopiles | Bacillariophyta | Bacillariophyceae | Bacillariophycidae | Bacillariales | Bacillariaceae | Fragilariopsis | Fragilariopsis cylindrus Go to NCBI Taxonomy (635003) Encyclopedia of life Wikipedia Projects: DOE Joint Genome Institute: Fragilariopsis cylindrus National Center for Biotechnology Information: NCBI Protozoa genomes Publication: Mock T, Otillar RP, Strauss J et. al. (2017) Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature 541, 536-540. 10.1038/nature20803

Fundulus heteroclitus | Fh

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Cyprinodontoidei | Fundulidae | Fundulus ]

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Taxonomy: Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Deuterostomia | Chordata | Craniata | Vertebrata | Gnathostomata | Teleostomi | Euteleostomi | Actinopterygii | Actinopteri | Neopterygii | Teleostei | Osteoglossocephalai | Clupeocephala | Euteleosteomorpha | Neoteleostei | Eurypterygia | Ctenosquamata | Acanthomorphata | Euacanthomorphacea | Percomorphaceae | Ovalentaria | Atherinomorphae | Cyprinodontiformes | Cyprinodontoidei | Fundulidae | Fundulus Common: mummichog, Atlantic killifish (German: Blaubandkärpfling) Go to NCBI Taxonomy (8078) Encyclopedia of life Wikipedia Projects: FunnyBase Expressed Gene Database: Annotated Fundulus Heteroclitus EST Gene Expression Database International TSA Sequencing Consortium: Fundulus heteroclitus TSA Sequencing Consortium National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project The Gene Index Project: DFCI Fundulus heteroclitus (Killifish) Gene Index The Marine Genomics Project: Fundulus species Publications: Shaw JR, Hampton TH, King BL et. al. (2014) Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes. Mol Biol Evol 31, 3002-3015. 10.1093/molbev/msu241 Paschall JE, Oleksiak MF, VanWye JD et. al. (2004) FunnyBase: a systems level functional annotation of Fundulus ESTs for the analysis of gene expression. BMC Genomics 5, 96. 10.1186/1471-2164-5-96

Fusarium fujikuroi B14 | Fufu_a

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Fusarium | Fusarium fujikuroi species complex | Fusarium fujikuroi ]

Courtesy of Clemson University

Taxonomy: Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | sordariomyceta | Sordariomycetes | Hypocreomycetidae | Hypocreales | Nectriaceae | Fusarium | Fusarium fujikuroi species complex | Fusarium fujikuroi Synonym: Gibberella fujikuroi Go to NCBI Taxonomy (1215603) Encyclopedia of life Wikipedia Projects: National Center for Biotechnology Information: NCBI Fungi Genomes Project Publications: Niehaus EM, Kim HK, Munsterkotter M et. al. (2017) Comparative genomics of geographically distant Fusarium fujikuroi isolates revealed two distinct pathotypes correlating with secondary metabolite profiles. PLoS Pathog 13, e1006670. 10.1371/journal.ppat.1006670 Jeong H, Lee S, Choi GJ et. al. (2013) Draft Genome Sequence of Fusarium fujikuroi B14, the Causal Agent of the Bakanae Disease of Rice. Genome Announc 1, e00035-13. 10.1128/genomeA.00035-13

Fusarium graminearum PH-1 | Fugr

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Fusarium | Fusarium sambucinum species complex | Fusarium graminearum ]

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Taxonomy: Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | sordariomyceta | Sordariomycetes | Hypocreomycetidae | Hypocreales | Nectriaceae | Fusarium | Fusarium sambucinum species complex | Fusarium graminearum Synonym: Gibberella zeae Comment: Gibberella zeae is the cause agency of head blight (scab) of wheat and barley. Go to NCBI Taxonomy (229533) Encyclopedia of life Wikipedia Projects: Broad Institute of Harvard and MIT: Fusarium Comparative Database National Center for Biotechnology Information: NCBI Fungi Genomes Project Publications: King R, Urban M, Hammond-Kosack MC et. al. (2015) The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum. BMC Genomics 16, 544. 10.1186/s12864-015-1756-1 Cuomo CA, Guldener U, Xu JR et. al. (2007) The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317, 1400-1402. 10.1126/science.1143708

Fusarium oxysporum f. sp. lycopersici 4287 | Fo

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Fusarium oxysporum species complex | Fusarium oxysporum | Fusarium oxysporum f. sp. lycopersici ]

Courtesy of Magnus Gammelgaard

Taxonomy: Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | sordariomyceta | Sordariomycetes | Hypocreomycetidae | Hypocreales | Nectriaceae | Fusarium | Fusarium oxysporum species complex | Fusarium oxysporum | Fusarium oxysporum f. sp. lycopersici Synonym: Fusarium angustum (obsolete), Fusarium bostrycoides (obsolete), Fusarium bulbigenum (obsolete), Fusarium conglutinans (obsolete), Fusarium dianthi (obsolete), Fusarium lini (obsolete), Fusarium orthoceras (obsolete), Fusarium tracheiphilum (obsolete), Fusarium vasinfectum (obsolete) Comment: plant pathogen Go to NCBI Taxonomy (426428) Encyclopedia of life Wikipedia Projects: Broad Institute of Harvard and MIT: Fusarium Comparative Database National Center for Biotechnology Information: NCBI Fungi Genomes Project Publication: Ma LJ, van der Does HC, Borkovich KA et. al. (2010) Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464, 367-373. 10.1038/nature08850

Fusarium pseudograminearum CS3096 | Fup

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Fusarium | Fusarium sambucinum species complex | Fusarium pseudograminearum ]

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Taxonomy: Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | sordariomyceta | Sordariomycetes | Hypocreomycetidae | Hypocreales | Nectriaceae | Fusarium | Fusarium sambucinum species complex | Fusarium pseudograminearum Go to NCBI Taxonomy (1028729) Encyclopedia of life Wikipedia Projects: National Center for Biotechnology Information: NCBI Fungi Genomes Project Publication: Gardiner DM, McDonald MC, Covarelli L et. al. (2012) Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts. PLoS Pathog 8, e1002952. 10.1371/journal.ppat.1002952

Fusarium sporotrichioides | Fus

[ Opisthokonta | Fungi | Dikarya | . . .
. . . | Nectriaceae | Fusarium | Fusarium sambucinum species complex ]

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Taxonomy: Eukaryota | Opisthokonta | Fungi | Dikarya | Ascomycota | saccharomyceta | Pezizomycotina | leotiomyceta | sordariomyceta | Sordariomycetes | Hypocreomycetidae | Hypocreales | Nectriaceae | Fusarium | Fusarium sambucinum species complex Synonym: Fusarium sporotrichiella var. sporotrichiodes (obsolete) Comment: The filamentous fungus Fusarium sporotrichioides is a contaminant of cereal grains, such as wheat and maize. It produces trichothecenes, notably T-2 toxin, which are potent inhibitors of eukaryotic protein synthesis. Fusarium sporotrichioides is a significant agricultural problem due to the harmful effects of T-2 toxin on humans and animals who consume contaminated food. Go to NCBI Taxonomy (5514) Encyclopedia of life Wikipedia